Publications

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de Oliveira, LG, Vellado DM, Tartaruga L, Carlos L{\'ıs, Gertz JFL.  Submitted.  PLATAFORMA DE FOR{\c{C}}A DESENVOLVIDA PARA COLETA DE DADOS NO REMO ERGÔMETRO. Abstract
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2024
HILGEMBERG, JOÃOOTÁVIO, Andreta I, MARIANI ALEXANDREBONADIMAN, NEIMAIER ALISSON, Valk M, BITTARELLO FERNANDO, HILGEMBERG RAFAELA, LEHNEN CHEILAROBERTA.  2024.  Decision trees as a tool for selecting sows in commercial herds. SCIENTIA AGRICOLA. 81Website
Vasques, CK, do Esp{\'ırito Santo AM, Meletti SMF.  2024.  ACESSO DE ESTUDANTES AUTISTAS À EDUCA{\c{C}}ÃO BÁSICA NO BRASIL: uma análise a partir do censo escolar. Curr{\'ıculo sem Fronteiras. 24:e1134. Abstract
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Castelli, RF, Pereira A, Honorato L, Valdez A, de Oliveira HC, Bazioli JM, Garcia AWA, Klimeck TD'MF, Reis FCG, Camillo-Andrade AC, Santos MDM, Carvalho PC, Zaragoza O, Staats CC, Nimrichter L, Fill TP, Rodrigues ML.  2024.  Corrected and republished from: “Extracellular Vesicle Formation in Cryptococcus deuterogattii Impacts Fungal Virulence”. Infection and Immunity. 92, Number 4 AbstractWebsite
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Castelli, RF, Pereira A, Honorato L, Valdez A, de Oliveira HC, Bazioli JM, Garcia AWA, Klimeck TD'MF, Reis FCG, Staats CC, Nimrichter L, Fill TP, Rodrigues ML.  2024.  Erratum: Correction for Castelli et al., "Extracellular Vesicle Formation in Cryptococcus deuterogattii Impacts Fungal Virulence and Requires the NOP16 Gene" (Infection and immunity (2022) 90 8 (e0023222)). Infection and immunity. 92:e0004924., Number 4 AbstractWebsite
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2023
de Oliveira, MJK, Valk M, Melo ADB, Marçal DA, Silva CA, da Valini GAC, Arnaut PR, Gonçalves JPR, Andretta I, Hauschild L.  2023.  Feeding Behavior of Finishing Pigs under Diurnal Cyclic Heat Stress. Animals. 13(5):908.Website
Cintra, RF, Valk M, Filho DM.  2023.  A model-free-based control chart for batch process using U-statistics. Journal of Process Control. Website
Franke, L, Vieira M, Fonseca PCD.  2023.  Os caminhos para o desenvolvimento do Brasil: revisita às interpretações de Celso Furtado e de Fernando Henrique Cardoso. História Econômica & História de Empresas. 26(1):172-207.frank_vieira_e_fonseca.pdf
Bello, DZ, Valk M, Cybis GB.  2023.  Towards U-statistics clustering inference for multiple groups. Journal of Statistical Computation and Simulation. :1-19.Website
2022
Villegas-Martín, J, Rojas-Consuegra R, Verde M, Belaústegui Z, Ritter M, Horodyski RS.  2022.  Bioerosion on rudist shells from the Upper Cretaceous of Cuba: Paleobiological, paleoecological and taphonomic implications, 2021. :103665. AbstractWebsite

The fossil record of bioerosion on rudists is commonly restricted to brief mentions that mainly use general terms and do not constitute detailed ichnological studies. This contribution comprises a detailed study of the bioerosion structures present on the shells of different species of rudists from the Upper Cretaceous (Maastrichtian) of Cuba. In addition, paleobiological, paleoecological and taphonomic implications of these boring are inferred. Among the studied material, seventeen rudist shells exhibits bioerosion structures. Based on their morphological features the borings have been ascribed to Gastrochaenolites isp. and Entobia isp. Gastrochaenid bivalves and clionaid sponges, respectively, have been proposed as their more likely producers. The modes of occurrence, density, and position of such bioerosion structures rule out a syn-vivo relationship between rudists and boring bivalves and sponges, demonstrating that colonization mainly was postmortem. Furthermore, the combination of these data together with previous paleoecological interpretations and the fact that the most parts of the rudist shells are filled by sediment, provides enough evidence to propose a subsequent process of reworking and reburial of these shells in shallow marine settings.

de Oliveira, BN, Valk M, Filho DM.  2022.  Fault detection and diagnosis of batch process dynamics using ARMA-based control charts. Journal of Process Control. 111:46-58. AbstractWebsite

A wide range of approaches for batch processes monitoring can be found in the literature. This kind of process generates a very peculiar data structure, in which successive measurements of many process variables in each batch run are available. Traditional approaches do not take into account the time series nature of the data. The main reason is that the time series inference theory is not based on replications of time series, as it is in batch process data. It is based on the variability in a time domain. This fact demands some adaptations of this theory in order to accommodate the model coefficient estimates, considering jointly the batch to batch samples variability (batch domain) and the serial correlation in each batch (time domain). In order to address this issue, this paper proposes a new approach grounded in a group of control charts based on the classical ARMA model for monitoring and diagnostic of batch processes dynamics. The model coefficients are estimated (through the ordinary least square method) for each historical time series sample batch and modified Hotelling and t-Student distributions are derived and used to accommodate those estimates. A group of control charts based on that distributions are proposed for monitoring the new batches. Additionally, those groups of charts help to fault diagnosis, identifying the source of disturbances. Through simulated and real data we show that this approach seems to work well for both purposes.

Fraga, AZ, Hauschild L, Campos PHRF, Valk M, Bello DZ, Kipper M, Andretta I.  2022.  Genetic selection modulates feeding behavior of group-housed pigs exposed to daily cyclic high ambient temperatures. Plos One. OnlineWebsite
Moraes, LRC, Barichello LB, Barros, R. C, Vasques R.  2022.  On the Application of the Analytical Discrete Ordinates Method to the Solution of Nonclassical Transport Problems in Slab Geometry. Journal of Computational Physics. 455:110982.
Castelli, RF, Pereira A, Honorato L, Valdez A, de Oliveira HC, Bazioli JM, Garcia AWA, D’Maiella Freitas Klimeck T, Reis FCG, Staats CC, Nimrichter L, Fill TP, Rodrigues ML.  2022.  Extracellular Vesicle Formation in Cryptococcus deuterogattii Impacts Fungal Virulence and Requires the NOP16 Gene. Infection and Immunity. 90, Number 8 AbstractWebsite
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Machado, E, Lanferdini FJ, da Silva ES, Geremia JM, Sonda FC, Fletcher JR, Vaz MA, Peyré-Tartaruga LA.  2022.  Triceps Surae Muscle-Tendon Properties as Determinants of the Metabolic Cost in Trained Long-Distance Runners. Frontiers in Physiology. 12 AbstractWebsite
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2021
Lima, ALS, Braun SMAH, Vasques CK.  2021.  Normocentrismo tem remédio?: Considerações anticapacitistas na escola Fármacos, remédios, medicamentos: O que a educação tem com isso?. , Porto Alegre: Rede UNIDA001125394.pdf
Mautone, G, Lima ALS, Vasques CK.  2021.  A Pergunta Esquecida: linguagem, alteridade e sujeito na educação especial. Currículo sem Fronteiras. 21(1):52-71.mautone-lima-vasques.pdf
Gomes, BCK, Andretta I, Valk M, Pomar C, Hauschild L, Fraga AZ, Kipper M, Trevizan L, Remus A.  2021.  Prandial Correlations and Structure of the Ingestive Behavior of Pigs in Precision Feeding Programs. Animals. 11(10) AbstractWebsite

The feeding behavior of growing-finishing pigs was analyzed to study prandial correlations and the probability of starting a new feeding event. The data were collected in real-time based on 157,632 visits by a group of 70 growing-finishing pigs (from 30.4 to 115.5 kg body weight, BW) to automatic feeders. The data were collected over 84 days, during which period the pigs were kept in conventional (by phase and by group) or precision (with daily and individual adjustments) feeding programs. A criterion to delimit each meal was then defined based on the probability of an animal starting a new feeding event within the next minute since the last visit. Prandial correlations were established between meal size and interval before meal (pre-prandial) or interval after meal (post-prandial) using Pearson correlation analysis. Post-prandial correlations (which can be interpreted as hunger-regulating mechanisms) were slightly stronger than pre-prandial correlations (which can be interpreted as satiety regulation mechanisms). Both correlations decreased as the animals’ age increased but were little influenced by the feeding programs. The information generated in this study allows a better understanding of pigs’ feeding behavior regulation mechanisms and could be used in the future to improve precision feeding programs.

Valk, M, Cybis GB.  2021.  U-statistical inference for hierarchical clustering. Journal of Computational and Graphical Statistics. 30(1) Abstractwebsite

Clustering methods are valuable tools for the identifcation of patterns in high dimensional data with applications in many scientifc felds. However, quantifying uncertainty in clustering is a challenging problem, particularly when dealing with High Dimension Low Sample Size (HDLSS) data. We develop a U-statistics based clustering approach that assesses statistical signifcance in clustering and is specifcally tailored to HDLSS scenarios. These non-parametric methods rely on very few assumptions about the data, and thus can be applied to a wide range of dataset for which the Euclidean distance captures relevant features. Our main result is the development of a hierarchical signifcance clustering method. In order to do so, we first introduce an extension of a relevant U-statistic and develop its asymptotic theory. Additionally, as a preliminary step, we propose a binary non-nested signifcance clustering method and show its optimality in terms of expected values. Our approach is tested through multiple simulations and found to have more statistical power than competing alternatives in all scenarios considered. They are further showcased in three applications ranging from genetics to image recognition problems.

Bazzo, A, Dias SLP, Vaghetti JCP, Ornaghi HL, Agnol LD, Bianchi O.  2021.  Caesalpinia ferrea: a potential feedstock for biochar production. Biomass Conversion and Biorefinery. AbstractWebsite
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Sbaraini, N, Junges Â, de Oliveira ES, Webster A, Vainstein MH, Staats CC, Schrank A.  2021.  The deletion of chiMaD1, a horizontally acquired chitinase of Metarhizium anisopliae, led to higher virulence towards the cattle tick (Rhipicephalus microplus). FEMS Microbiology Letters. 368, Number 12 AbstractWebsite
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